try: import json from tkinter import * from tkinter import filedialog from tkinter import ttk, Image, PhotoImage from tkinter.messagebox import * from pydantic import BaseModel from mzML import mzMLread import threading import os import sys import time import subprocess except ModuleNotFoundError as e: raise e.msg else: PATH = os.getcwd().replace(os.path.sep, "/") class Styles(BaseModel): generalFont = "Calibri" label = (generalFont, 12) labelTitle = (generalFont, 50) class AppData(BaseModel): SaveDirectory : str = "" UseCustomDirectory : bool = False FolderDirectory : str = "" appData = AppData() def resource_path(relative_path): """ Get absolute path to resource, works for dev and for PyInstaller """ try: # PyInstaller creates a temp folder and stores path in _MEIPASS base_path = sys._MEIPASS except Exception: base_path = os.path.abspath(".") return os.path.join(base_path, relative_path) appStyles = Styles() filesToOpen = [] command = f"""sudo open {os.getcwd().split("/Contents/Resources")[0]}""" def AskAdminRights(): os.system(f"""osascript -e 'tell application "Terminal" to do script "{command}; exit"'""") if not os.getenv("SUDO_USER"): if askokcancel("The app needs to be ran with administrator rights.", f"""The app needs to be ran with administrator rights. \nBy clicking "OK", you will be asked for running this command (System Preferences prompt can appear, just accept the mzMLtoMat app to access to your Terminal) : \n\n{command}\n\nThis will allow the application to convert your files correctly. Thanks !"""): threading.Thread(target=AskAdminRights).start() exit(code=13) else: def launch(filesToConvert : list[str] = None, output : str = None, basePath : str = None, save : bool = False): MainWindow = Tk() MainWindow.title("mzMLtoMat") MainWindow.geometry("400x500") MainWindow.resizable(0,0) def LoadData(): if output : global filesToOpen filesToOpen = filesToConvert global savePath if save : global appData appData = AppData(SaveDirectory=output, UseCustomDirectory=True, FolderDirectory=basePath) CB_UseSaveDirectory.config(state=NORMAL) IsChecked.set(appData.UseCustomDirectory) Txt_CurrentDirectory.config(text=f"Current Save Directory : {output}") with open(f"{PATH}/data/UI/appData.mlMat", "w+") as file: file.write(str(appData.json(exclude={"FolderDirectory"}))) file.close() else: savePath = output CB_UseSaveDirectory.config(state=NORMAL) IsChecked.set(appData.UseCustomDirectory) Txt_CurrentDirectory.config(text=f"Current Save Directory : {output}") threading.Thread(target=StartConversion).start() return try : with open(f"{PATH}/data/UI/appData.mlMat", 'r+') as file: data = file.readline() if data: appData = AppData().parse_obj(json.loads(data)) if appData.SaveDirectory and appData.UseCustomDirectory: CB_UseSaveDirectory.config(state=NORMAL) IsChecked.set(appData.UseCustomDirectory) Txt_CurrentDirectory.config(text=f"Current Save Directory : {appData.SaveDirectory}") elif appData.SaveDirectory: CB_UseSaveDirectory.config(state=NORMAL) BtnOutputFolder.config(state=DISABLED) Txt_CurrentDirectory.config(text="Current Save Directory : data's folder") else: CB_UseSaveDirectory.config(state=DISABLED) BtnOutputFolder.config(state=DISABLED) BtnOutputFolder.config(state=DISABLED) Txt_CurrentDirectory.config(text="Current Save Directory : data's folder") file.close() else: with open(f"{PATH}/data/UI/appData.mlMat", 'w+') as file: file.write(str(appData.json(exclude={"FolderDirectory"}))) file.close() CB_UseSaveDirectory.config(state=DISABLED) BtnOutputFolder.config(state=DISABLED) except FileNotFoundError: with open(f"{PATH}/data/UI/appData.mlMat", 'x') as file: file.write(str(appData.json(exclude={"FolderDirectory"}))) CB_UseSaveDirectory.config(state=DISABLED) BtnOutputFolder.config(state=DISABLED) file.close() def AskFiles(): global filesToOpen filesToOpen = filedialog.askopenfilenames(title="Select files to convert...",filetypes=[("mzML-DataFiles", ".xml")]) if filesToOpen : path = filesToOpen[0].rsplit("/", 1)[0] appData.FolderDirectory = path if not appData.UseCustomDirectory: Txt_CurrentDirectory.config(text=f"Current Save directory : {appData.FolderDirectory}") files = "" for i in filesToOpen: files = files+i.rsplit("/", 1)[1].split(".mzdata")[0]+"\n \n" if askokcancel("Start Conversion ?", f"Theses files has been selected, start conversion ? \n \n{files}"): save = True threading.Thread(target=StartConversion).start() else: showinfo("Conversion Canceled", "Conversion Canceled") else : showerror("No files provided !", "Please select files to convert") def Gifs(): frame_index = 0 # Frame index while ChooseFileBtn.cget("state") != NORMAL: try: # Read a frame from GIF file part = 'gif -index {}'.format(frame_index) frame = PhotoImage(file=resource_path('Chargement.gif'), format=part) except: global last_frame last_frame = frame_index - 1 # Save index for last frame break # Will break when GIF index is reached framelist.append(frame) frame_index = frame_index+1 # Next frame index def animate(frame_number): if ChooseFileBtn.cget("state") != NORMAL: if frame_number > last_frame: frame_number = 0 LabelImage.config(image=framelist[frame_number]) MainWindow.after(50, animate, frame_number+1) def StartConversion(): ChooseFileBtn.config(state=DISABLED) BtnClose.config(state=DISABLED) CB_UseSaveDirectory.config(state=DISABLED) ChooseSaveBtn.config(state=DISABLED) console.insert(-1, f"[Conversion] Conversion started for {len(filesToOpen)} item{'s' if len(filesToOpen) > 1 else ''}...") MainWindow.focus() global PbConversion PbConversion = ttk.Progressbar(MainWindow, maximum=1, orient=HORIZONTAL, length=300) PbConversion.pack(before=console) threading.Thread(target=StartTimer).start() FramePercent = Frame(MainWindow) FramePercent.pack(before=PbConversion, pady=5) TextPercent = Label(FramePercent, font=appStyles.label, text="0%") TextPercent.grid(row=0, column=0) global LabelImage LabelImage = Label(FramePercent) Gifs() animate(0) LabelImage.grid(row=0, column=1) for i in filesToOpen : currentFile = i.rsplit("/", 1)[1].split(".mzdata")[0] console.insert(-1, f"[Conversion] Started Converting file {currentFile}...") console.update() if save : mzMLread(i, formated=True, customDirectory=appData.SaveDirectory if appData.SaveDirectory and appData.UseCustomDirectory else "") else: mzMLread(i, formated=True, customDirectory=savePath) toGo = filesToOpen.index(i)+1 toGo = len(filesToOpen)-toGo if toGo != 0: console.insert(-1, f"[Conversion] Finished Converting file {currentFile}, {toGo} files to go.") percent = ((filesToOpen.index(i)+1)/len(filesToOpen)) PbConversion.config(value=percent) TextPercent.config(text=f"{round(percent*100)}%") console.update() else: console.insert(-1, "[Conversion] Conversion finished !") PbConversion.pack_forget() FramePercent.pack_forget() console.insert(-1, f"[Conversion] Executed in {timer} seconds.") ChooseFileBtn.config(state=NORMAL) BtnClose.config(state=NORMAL) if appData.SaveDirectory: CB_UseSaveDirectory.config(state=NORMAL) ChooseSaveBtn.config(state=NORMAL) BtnOutputFolder.config(state=NORMAL) time.sleep(1) showinfo("Conversion finished", f"Successfully converted {len(filesToOpen)} files !") def StartTimer(): global timer timer = "0:00" timeLabel = Label(MainWindow, text=timer) timeLabel.pack(after=PbConversion) while ChooseFileBtn.cget("state") != NORMAL: for i in range(60): if ChooseFileBtn.cget("state") != NORMAL: time.sleep(1) if i+1 < 10: timer = timer.replace(timer.split(":")[1], "0"+str(i+1)) else: timer = timer.replace(timer.split(":")[1], str(i+1)) timeLabel.config(text=timer) else: break timer = timer.replace(timer.split(":")[0], str(int(timer.split(":")[0])+1)) timer = timer.replace(timer.split(":")[1], "00") timeLabel.config(text=timer) timeLabel.pack_forget() def GetSaveDirectory(): newDirectory = filedialog.askdirectory(mustexist=True, title="Choose a save Directory...") if not newDirectory: showwarning("Directory Invalid", "Please select a valid directory.") else: with open(f"{PATH}/data/UI/appData.mlMat", "w+") as file: appData.SaveDirectory = newDirectory CB_UseSaveDirectory.config(state=NORMAL) file.write(str(appData.json(exclude={"FolderDirectory"}))) file.close() showinfo("Save directory successfully changed !", "Save directory successfully changed !") def SwitchCustomDirectory(): if IsChecked.get(): appData.UseCustomDirectory = True Txt_CurrentDirectory.config(text=f"Current Save Directory : {appData.SaveDirectory}") BtnOutputFolder.config(state=NORMAL) with open(f"{PATH}/data/UI/appData.mlMat", "w+") as file: file.write(str(appData.json(exclude={"FolderDirectory"}))) file.close() else: appData.UseCustomDirectory = False if appData.FolderDirectory: Txt_CurrentDirectory.config(text=f"Current Save Directory : {appData.FolderDirectory}") BtnOutputFolder.config(state=NORMAL) else: Txt_CurrentDirectory.config(text="Current Save Directory : data's folder") BtnOutputFolder.config(state=DISABLED) with open(f"{PATH}/data/UI/appData.mlMat", "w+") as file: file.write(str(appData.json(exclude={"FolderDirectory"}))) file.close() def OpenOutputFolder(): if save: file_to_show = appData.SaveDirectory if appData.UseCustomDirectory else appData.FolderDirectory else: file_to_show = savePath print(file_to_show) if not file_to_show.endswith("/"): file_to_show = file_to_show+"/" subprocess.call(["open", "-R", file_to_show]) else: subprocess.call(["open", "-R", file_to_show]) Label(MainWindow, text="mzMLtoMat", anchor=CENTER, font=appStyles.labelTitle).pack() Label(MainWindow, text="Welcome into .mzdata.xml to .mat files app converter !", font=appStyles.label, wraplength=300).pack(pady=10) FrameButtons = Frame(MainWindow) FrameButtons.pack(pady=10, anchor=CENTER) ChooseFileBtn = Button(FrameButtons, text="Choose files to convert", command=AskFiles) ChooseFileBtn.grid(row=0, column=0) ChooseSaveBtn = Button(FrameButtons, text="Choose Save Directory...", command=GetSaveDirectory) ChooseSaveBtn.grid(row=0, column=1) IsChecked = BooleanVar() CB_UseSaveDirectory = Checkbutton(MainWindow, text="Use Custom Directory", variable=IsChecked, command=SwitchCustomDirectory) CB_UseSaveDirectory.pack() Txt_CurrentDirectory = Label(MainWindow, text="Current Save Directory : data's folder", wraplength=300) Txt_CurrentDirectory.pack() console = Listbox(MainWindow) console.pack(pady=10, padx=20, fill=X) BtnOutputFolder = Button(MainWindow, text="Open Output folder", command=OpenOutputFolder) BtnOutputFolder.pack(after=FrameButtons) BtnClose = Button(MainWindow, text="CLOSE", anchor=CENTER, command=MainWindow.destroy) BtnClose.pack(pady=5) framelist = [] # List to hold all the frames LoadData() MainWindow.mainloop()